mycobacrvR (version 1.1)

bcepred_nmer: Epitope conservation prediction from Bcepred server information

Description

bcepred_nmer is a method to predict conservation of epitopes among orthologs from Bcepred server data

Usage

bcepred_nmer(clas)

Arguments

clas

A character vector for server name

Value

bcepred_nmer() will write two files in the working directory. One file contains the information of epitope and the other file contains metadata for epitope showing orthologs of H37Rv

Details

This function takes server name "bcepred" as input into clas object. Input data for this function is present in "/data_mycobacrvR/bcepred_out" directory, therefore set working directory to "~/data_mycobacrvR/bcepred_out/" before using this function. Bcepred server provides epitopes of different length.

Examples

# NOT RUN {
bcepred_nmer("bcepred")
# }
# NOT RUN {
##Conservation of epitopes from Bcepred server
# }