nanny (version 0.1.8)

get_reduced_dimensions_MDS_bulk: Get dimensionality information to a tibble using MDS

Description

Get dimensionality information to a tibble using MDS

Usage

get_reduced_dimensions_MDS_bulk(
  .data,
  .element = NULL,
  .feature = NULL,
  .value = NULL,
  .dims = 2,
  top = Inf,
  of_elements = TRUE,
  transform = NULL
)

Arguments

.data

A tibble

.element

A column symbol. The column that is used to calculate distance (i.e., normally elements)

.feature

A column symbol. The column that is represents entities to cluster (i.e., normally genes)

.value

A column symbol with the value the clustering is based on (e.g., `count`)

.dims

A integer vector corresponding to principal components of interest (e.g., 1:6)

top

An integer. How many top genes to select

of_elements

A boolean

transform

A function to use to tranforma the data internalli (e.g., log1p)

Value

A tibble with additional columns