A low-level entry point to the NBLAST algorithm that compares the morphology
of a neuron with those of a list of other neurons. For most use cases, one
would probably wish to use nblast instead.
NeuriteBlast(
query,
target,
targetBinds = NULL,
normalised = FALSE,
OmitFailures = NA,
simplify = TRUE,
...
)Named list of similarity scores.
either a single query neuron or a neuronlist
a neuronlist to compare neuron against.
numeric indices or names with which to subset
target.
whether to divide scores by the self-match score of the query
Whether to omit neurons for which FUN gives an
error. The default value (NA) will result in nblast stopping
with an error message the moment there is an error. For other values, see
details.
whether to simplify the scores from a list to a vector.
TRUE by default. The only time you might want to set this false is
if you are collecting something other than simple scores from the search
function. See simplify2array for further details.
extra arguments to pass to the distance function.
For detailed description of the OmitFailures argument, see
the details section of nblast.
WeightedNNBasedLinesetMatching