neuron_pairs

Utility function to generate all or random pairs of neurons

Extends package 'nat' (NeuroAnatomy Toolbox) by providing a
collection of NBLAST-related functions for neuronal morphology comparison (Costa et al. (2016) <doi: 10.1016/j.neuron.2016.06.012>).

Gregory Jefferis

nat.nblast

NeuroAnatomy Toolbox ('nat') Extension for Assessing Neuron
Similarity and Clustering

James Manton

neuron_pairs function

<dl><dt>query, target</dt>
<dd>either <code>neuronlist</code>s or character vectors of
names. If target is missing, query will be used as both query and target.</dd>
<dt>n</dt>
<dd>number of random pairs to draw. When NA, the default, uses
<code>expand.grid</code> to draw all pairs.</dd>
<dt>ignoreSelf</dt>
<dd>Logical indicating whether to omit pairs consisting of the
same neuron (default <code>TRUE</code>).</dd></dl>

Arguments

Utility function to generate all or random pairs of neurons — neuron_pairs

<dl>

<dt>query, target</dt>
<dd>either <code>neuronlist</code>s or character vectors of
names. If target is missing, query will be used as both query and target.</dd>


<dt>n</dt>
<dd>number of random pairs to draw. When NA, the default, uses
<code>expand.grid</code> to draw all pairs.</dd>


<dt>ignoreSelf</dt>
<dd>Logical indicating whether to omit pairs consisting of the
same neuron (default <code>TRUE</code>).</dd>

</dl>

neuron_pairs: Utility function to generate all or random pairs of neurons

Description

Usage

Value

Arguments

See Also

Examples