cmtk.targetvolume: Defines a target volume for a CMTK reformatx operation
Description
cmtk.targetvolume.list is designed to cope with any
user-defined class for which an as.im3d method exists. Presently the only
example in the nat.* ecosystem is
nat.templatebrains::as.im3d.templatebrain.
Usage
cmtk.targetvolume(target, ...)
# S3 method for im3d
cmtk.targetvolume(target, ...)
# S3 method for list
cmtk.targetvolume(target, ...)
# S3 method for default
cmtk.targetvolume(target, ...)
Value
a character vector specifying the full cmtk reformatx '--target' or
'--target-grid' argument
Arguments
target
A character vector specifying an image file on disk, an
im3d object (or an object that can be coerced to im3d) or a 6-or
9-vector defining a grid in the form Nx,Ny,Nz,dX,dY,dZ,[Ox,Oy,Oz].
...
additional arguments passed to methods
Details
if the character vector specifies an amiramesh file, it will be
converted to a bare im3d object and then to an appropriate
'--target-grid' specification.