cmtkreglist

Make in-memory CMTK registration list from affine matrix or CMTK parameters

NeuroAnatomy Toolbox (nat) enables analysis and visualisation of 3D
biological image data, especially traced neurons. Reads and writes 3D images
in NRRD and 'Amira' AmiraMesh formats and reads surfaces in 'Amira' hxsurf
format. Traced neurons can be imported from and written to SWC and 'Amira'
LineSet and SkeletonGraph formats. These data can then be visualised in 3D
via 'rgl', manipulated including applying calculated registrations, e.g.
using the 'CMTK' registration suite, and analysed. There is also a simple
representation for neurons that have been subjected to 3D skeletonisation
but not formally traced; this allows morphological comparison between
neurons including searches and clustering (via the 'nat.nblast' extension
package).

Gregory Jefferis

NeuroAnatomy Toolbox for Analysis of 3D Image Data

James Manton

Dominik Krzeminski

cmtkreglist function

<dl><dt>x</dt>
<dd>5x3 matrix of CMTK registration parameters OR 4x4 homogeneous affine
matrix</dd>
<dt>centre</dt>
<dd>Optional centre of rotation passed to <code>affmat2cmtkparams</code> 
when decomposing 4x4 affine matrix</dd>
<dt>reference, floating</dt>
<dd>Path to refererence and floating images.</dd></dl>

Arguments

Make in-memory CMTK registration list from affine matrix or CMTK parameters — cmtkreglist

<dl>

<dt>x</dt>
<dd>5x3 matrix of CMTK registration parameters OR 4x4 homogeneous affine
matrix</dd>


<dt>centre</dt>
<dd>Optional centre of rotation passed to <code>affmat2cmtkparams</code> 
when decomposing 4x4 affine matrix</dd>


<dt>reference, floating</dt>
<dd>Path to refererence and floating images.</dd>

</dl>

cmtkreglist: Make in-memory CMTK registration list from affine matrix or CMTK parameters

Description

Usage

Value

Arguments

Details

See Also