For read.im3d an objecting inheriting from base array
and im3d classes.
Arguments
file
Character vector describing a single file
ReadData
Whether to read the data itself or return metadata only.
Default: TRUE
SimplifyAttributes
When TRUE leave only core im3d attributes.
ReadByteAsRaw
Whether to read byte values as R raw
arrays. These occupy 1/4 memory but arithmetic is less convenient.
(default: FALSE)
...
Arguments passed to methods
x
The image data to write (an im3d, or capable of being interpreted as
such)
format
Character vector specifying an image format (e.g. "nrrd",
"amiramesh"). Optional, since the format will normally be inferred from the
file extension. See getformatwriter for details.
Details
Currently only nrrd and amira formats are implemented. Furthermore
implementing a registry to allow extension to arbitrary formats remains a
TODO item.
The core attributes of an im3d object are BoundingBox, origin, x, y ,
z where x, y, z are the locations of samples in the x, y and z
image axes (which are assumed to be orthogonsl).