imslice

Slice out a 3D subarray (or 2d matrix) from a 3D image array

NeuroAnatomy Toolbox (nat) enables analysis and visualisation of 3D
biological image data, especially traced neurons. Reads and writes 3D images
in NRRD and 'Amira' AmiraMesh formats and reads surfaces in 'Amira' hxsurf
format. Traced neurons can be imported from and written to SWC and 'Amira'
LineSet and SkeletonGraph formats. These data can then be visualised in 3D
via 'rgl', manipulated including applying calculated registrations, e.g.
using the 'CMTK' registration suite, and analysed. There is also a simple
representation for neurons that have been subjected to 3D skeletonisation
but not formally traced; this allows morphological comparison between
neurons including searches and clustering (via the 'nat.nblast' extension
package).

Gregory Jefferis

NeuroAnatomy Toolbox for Analysis of 3D Image Data

James Manton

Dominik Krzeminski

imslice function

<dl><dt>x</dt>
<dd>An im3d objet</dd>
<dt>slice</dt>
<dd>Indices defining the slices to keep</dd>
<dt>slicedim</dt>
<dd>Character vector or integer defining axis from which slices 
will be removed.</dd>
<dt>drop</dt>
<dd>Whether singleton dimensions will be dropped (default: TRUE) 
conveting 3D array to 2d matrix.</dd></dl>

Arguments

Slice out a 3D subarray (or 2d matrix) from a 3D image array — imslice

<dl>

<dt>x</dt>
<dd>An im3d objet</dd>


<dt>slice</dt>
<dd>Indices defining the slices to keep</dd>


<dt>slicedim</dt>
<dd>Character vector or integer defining axis from which slices 
will be removed.</dd>


<dt>drop</dt>
<dd>Whether singleton dimensions will be dropped (default: TRUE) 
conveting 3D array to 2d matrix.</dd>

</dl>

imslice: Slice out a 3D subarray (or 2d matrix) from a 3D image array

Description

Usage

Arguments

Details

See Also