seglist2swc

Uses the SegList field (indices into point array) to recalculate point 
numbers and parent points for SWC data field (d).

NeuroAnatomy Toolbox (nat) enables analysis and visualisation of 3D
biological image data, especially traced neurons. Reads and writes 3D images
in NRRD and 'Amira' AmiraMesh formats and reads surfaces in 'Amira' hxsurf
format. Traced neurons can be imported from and written to SWC and 'Amira'
LineSet and SkeletonGraph formats. These data can then be visualised in 3D
via 'rgl', manipulated including applying calculated registrations, e.g.
using the 'CMTK' registration suite, and analysed. There is also a simple
representation for neurons that have been subjected to 3D skeletonisation
but not formally traced; this allows morphological comparison between
neurons including searches and clustering (via the 'nat.nblast' extension
package).

Gregory Jefferis

NeuroAnatomy Toolbox for Analysis of 3D Image Data

James Manton

Dominik Krzeminski

seglist2swc function

<dl><dt>x</dt>
<dd>Neuron containing both the SegList and d fields or a plain seglist</dd>
<dt>d</dt>
<dd>SWC data block (only expected if x is a SegList)</dd>
<dt>RecalculateParents</dt>
<dd>Whether to recalculate parent points (default T)</dd>
<dt>...</dt>
<dd>Additional arguments passed to <code>normalise_swc</code></dd></dl>

Arguments

Recalculate Neurons's SWCData using SegList and point information — seglist2swc

<dl>

<dt>x</dt>
<dd>Neuron containing both the SegList and d fields or a plain seglist</dd>


<dt>d</dt>
<dd>SWC data block (only expected if x is a SegList)</dd>


<dt>RecalculateParents</dt>
<dd>Whether to recalculate parent points (default T)</dd>


<dt>...</dt>
<dd>Additional arguments passed to <code>normalise_swc</code></dd>

</dl>

seglist2swc: Recalculate Neurons's SWCData using SegList and point information

Description

Usage

Value

Arguments

Details

See Also