write.cmtk

This is probaly only of interest to developers. End users will 
 probably wish to use more specific functions such as write.cmtkreg for
 writing out registrations.

NeuroAnatomy Toolbox (nat) enables analysis and visualisation of 3D
biological image data, especially traced neurons. Reads and writes 3D images
in NRRD and 'Amira' AmiraMesh formats and reads surfaces in 'Amira' hxsurf
format. Traced neurons can be imported from and written to SWC and 'Amira'
LineSet and SkeletonGraph formats. These data can then be visualised in 3D
via 'rgl', manipulated including applying calculated registrations, e.g.
using the 'CMTK' registration suite, and analysed. There is also a simple
representation for neurons that have been subjected to 3D skeletonisation
but not formally traced; this allows morphological comparison between
neurons including searches and clustering (via the 'nat.nblast' extension
package).

Gregory Jefferis

NeuroAnatomy Toolbox for Analysis of 3D Image Data

James Manton

Dominik Krzeminski

write.cmtk function

<dl><dt>l</dt>
<dd>Appropriately formatted list</dd>
<dt>con</dt>
<dd>A character string specifying a path or a connection</dd>
<dt>gzip</dt>
<dd>Whether to gzip output file (default FALSE)</dd>
<dt>version</dt>
<dd>TYPEDSTREAM version number, defaults to <code>"1.1"</code> if not 
specified in the version attribute of <code>l</code>.</dd></dl>

Arguments

Write a suitable list to a CMTK TypedStream file on disk — write.cmtk

<dl>

<dt>l</dt>
<dd>Appropriately formatted list</dd>


<dt>con</dt>
<dd>A character string specifying a path or a connection</dd>


<dt>gzip</dt>
<dd>Whether to gzip output file (default FALSE)</dd>


<dt>version</dt>
<dd>TYPEDSTREAM version number, defaults to <code>"1.1"</code> if not 
specified in the version attribute of <code>l</code>.</dd>

</dl>

write.cmtk: Write a suitable list to a CMTK TypedStream file on disk

Description

Usage

Arguments

Details

See Also