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ncdfFlow (version 2.18.0)

ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.

Description

Provides HDF5 storage based methods and functions for manipulation of flow cytometry data.

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Version

Version

2.18.0

License

Artistic-2.0

Maintainer

MJiang

Last Published

February 15th, 2017

Functions in ncdfFlow (2.18.0)

ncdfFlowSet-class

a class for storing flow cytometry raw data in HDF5 format
getFileName

get the cdf file name associated with ncdfFlowSet object
[,ncdfFlowSet,ANY-method

subsetting by sampleNames,channels(not for events) methods
split,ncdfFlowList,factor-method

split a ncdfFlowSet object.
clone.ncdfFlowSet

Clone a ncdfFlowSet
save_ncfs

save/load a ncdfFlowSet object to/from disk.
lapply,ncdfFlowList-method

lapply method for ncdfFlowList
ncfsApply,ncdfFlowSet-method

apply method for ncdfFlowSet (for internal use)
rbind2,ncdfFlowList,ANY-method

combine multiple ncdfFlowSet objects into one
ncdfFlow

ncdfFlow: A package that provides CDF storage based flow cytometry data analysis.
replacement method for ncdfFlowSet

write the flow data from a flowFrame to ncdfFlowSet
subset.ncdfFlowSet

subset the ncdfFlowSet/ncdfFlowList based on 'pData'
as.flowSet

convert from a ncdfFlowSet to a flowSet
ncdfFlowSet,flowSet-method

create ncdfFlowSet from flowSet
[[,ncdfFlowSet,ANY-method

extract a flowFrame object from ncdfFlowSet
getIndices,ncdfFlowSet,character-method

getIndices extracts the event indices of one or multiple samples from ncdfFlowSet
unlink,ncdfFlowSet-method

delete the cdf file associated with the ncdfFlowSet object
ncdfFlowList-class

a class that stores multiple ncdfFlowSet objects
densityplot,formula,ncdfFlowSet-method

flowViz plot methods.
Subset,ncdfFlowSet,filterResultList-method

subset a ncdfFlowSet by filter
filter,ncdfFlowList,filter-method

Accessors compatible with those for flowSet
read.ncdfFlowSet

create ncdfFlowSet from FCS files