neat (version 1.2.4)

plot.neat: Plot method of neat

Description

plot method for class "neat".

Usage

# S3 method for neat
plot(x, nbreaks = 10, ...)

Value

An histogram showing the distribution of p-values and a p-p plot comparing the distribution of p-values to the uniform distribution.

Arguments

x

An object of class "neat"

nbreaks

Number of breaks to be used in the histogram (default is 10)

...

Further arguments passed to or from other methods

Author

Mirko Signorelli

References

Signorelli, M., Vinciotti, V., Wit, E. C. (2016). NEAT: an efficient network enrichment analysis test. BMC Bioinformatics, 17:352. Url: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1203-6.

See Also

neat, print.neat, summary.neat

Examples

if (FALSE) {
data(yeast)
esr2 = list('ESR 2' = yeast$esr2)

test = neat(alist = esr2, blist = yeast$goslimproc, network = yeast$yeastnet, 
            nettype='undirected', nodes = yeast$ynetgenes, alpha = 0.01)

plot(test)
}