neat (version 1.2.4)

print.neat: Print method of neat

Description

print method for class "neat".

Usage

# S3 method for neat
print(x, nrows=10, ...)

Value

A dataframe showing the first nrows tests contained in a neat object.

Arguments

x

An object of class "neat"

nrows

Maximum number of results to print (default is 10). It can be either an integer number or "ALL"

...

Further arguments passed to or from other methods

Author

Mirko Signorelli

References

Signorelli, M., Vinciotti, V., Wit, E. C. (2016). NEAT: an efficient network enrichment analysis test. BMC Bioinformatics, 17:352. Url: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1203-6.

See Also

neat, plot.neat, summary.neat

Examples

A = matrix(0, nrow=7, ncol=7)
A[1,c(2,3)]=1; A[2,c(5,7)]=1;A[3,c(1,4)]=1;A[4,c(2,5,7)]=1;A[6,c(2,5)]=1;A[7,4]=1

labels = letters[1:7]
set1 = c('a','e')
set2 = c('c','g')
set3 = c('d','f')
alist = list('set 1' = set1, 'set 2' = set2)
blist = list('set 3' = set3)

test = neat(alist, blist, network=A, nettype='directed', nodes=labels, alpha=0.05)
print(test)