stackDatabases

Retrieves edges from specified databases and stacks them into one data.table.This is a helper function in <code>prepareAdjMat</code> and should not be called by the user.

Carry out network-based gene set analysis by incorporating external information about interactions among genes, as well as novel interactions learned from data. Implements methods described in Shojaie A, Michailidis G (2010) <doi:10.1093/biomet/asq038>, Shojaie A, Michailidis G (2009) <doi:10.1089/cmb.2008.0081>, and Ma J, Shojaie A, Michailidis G (2016) <doi:10.1093/bioinformatics/btw410>.

Michael Hellstern

netgsa

Network-Based Gene Set Analysis

Ali Shojaie

Jing Ma

Kun Yue

stackDatabases function

<dl> <dt>databases</dt>
<dd>Character vector of databases to compile. Should be one of the options from hspaiens in <code>graphite::pathwayDatabases()</code></dd></dl>

Arguments

Author

Combine edges from databases into a data.table — stackDatabases

<dl>

 <dt>databases</dt>
<dd>Character vector of databases to compile. Should be one of the options from hspaiens in <code>graphite::pathwayDatabases()</code></dd>

</dl>

stackDatabases: Combine edges from databases into a data.table

Description

Usage

Value

Arguments

Author

Details

References

See Also