extract_overlap

Extract Bayesian estimates of similarities among groups produced by the
following function <code>overlap()</code> in the package
<a href="https://cran.r-project.org/package=nicheROVER">nicheROVER</a>.

Provides functions complementary to packages 'nicheROVER' and 'SIBER'
allowing the user to extract Bayesian estimates from data objects created
by the packages 'nicheROVER' and 'SIBER'. Please see the following
publications for detailed methods on 'nicheROVER' and 'SIBER'
Hansen et al. (2015) <doi:10.1890/14-0235.1>,
Jackson et al. (2011) <doi:10.1111/j.1365-2656.2011.01806.x>, and
Layman et al. (2007) <doi:10.1890/0012-9658(2007)88[42:CSIRPF]2.0.CO;2>,
respectfully.

Benjamin Hlina

nichetools

Complementary Package to 'nicheROVER' and 'SIBER'

Benjamin L. Hlina

extract_overlap function

<dl><dt>data</dt>
<dd>a <code>array</code> object containing <code>matrices</code> created by the function
<code>overlap()</code> in the package
<a href="https://cran.r-project.org/package=nicheROVER">nicheROVER</a>.</dd>
<dt>name_a</dt>
<dd>character string to supply for the first
<code>sample_name</code> used in <code>overlap()</code>. Defaults to <code>"sample_name_a"</code>.</dd>
<dt>name_b</dt>
<dd>character string to supply for the second
<code>sample_name</code> used in <code>overlap()</code>. Defaults to <code>"sample_name_b"</code>.</dd></dl>

Arguments

Extract Bayesian estimates of similarities among groups produced by the
following function <code>overlap()</code> in the package
<a href='https://cran.r-project.org/package=nicheROVER'>nicheROVER</a>.

extract overlap — extract_overlap

<dl>

<dt>data</dt>
<dd>a <code>array</code> object containing <code>matrices</code> created by the function
<code>overlap()</code> in the package
<a href='https://cran.r-project.org/package=nicheROVER'>nicheROVER</a>.</dd>


<dt>name_a</dt>
<dd>character string to supply for the first
<code>sample_name</code> used in <code>overlap()</code>. Defaults to <code>"sample_name_a"</code>.</dd>


<dt>name_b</dt>
<dd>character string to supply for the second
<code>sample_name</code> used in <code>overlap()</code>. Defaults to <code>"sample_name_b"</code>.</dd>

</dl>

extract_overlap: extract overlap

Description

Usage

Value

Arguments

See Also

Examples