nonmem2R (version 0.2.5)

extToTable: Compile parameter table suitable for reports

Description

Load parameter values from a nonmem .ext output file and compile to table suitable for reports. Format can be "wide" (wide=TRUE, default) with a similar look as from sumoR, or similar a 3 column layout (wide=FALSE).

Usage

extToTable(
  model,
  use.model.path = TRUE,
  tableType = 2,
  wide = TRUE,
  format.estimate = "% -#6.4g",
  format.rse = "%#6.3g"
)

Value

a character-matrix

Arguments

model

name of the ext file with or without the .ext extension. model may include full or relative path to the ext file. See examples.

use.model.path

Load file from a global defined model library (TRUE=default). If so will look for a global character vector named model.path

tableType

Table type for THETA's, OMEGA's and SIGMA's

tableType=0: Present OMEGA and SIGMA as variance and covariances and display SE for THETA, OMEGA, SIGMA

tableType=1: Present OMEGA and SIGMA as variance and covariances and display RSE for THETA, OMEGA, SIGMA

tableType=2: Present OMEGA and SIGMA as standard-deviation and correlations and display RSE for THETA, OMEGA, SIGMA

tableType=3: Present OMEGA and SIGMA as standard-deviation and correlations and display SE for THETA, OMEGA, SIGMA

wide

produce a wide 9-column table (wide=TRUE, default) or a thin 3-column table(wide=FALSE)

format.estimate

format for estimated value, passed to sprintf

format.rse

format for rse, passed to sprintf

Examples

##### Load the .ext file "run001.ext"
# 1) Get path to the example file included in nonmem2R package
file1 <- system.file("extdata", "run001.ext", package = "nonmem2R")
# 2) Load the file using the extload function
extToTable(file1)