- vpcdir
Path of directory of the VPC files
- vpctab
Path to the vpctab-file
- vpcresult
Path to the vpcresult file
- use.model.path
Load file from a global defined model library (TRUE=default).
If so will look for a global character vector named model.path
- strata.names
Character vector for strata names. Must have length equal to number of strata's in vpc files, otherwise ignored.
- strata.subset
Vector specifying subset of strata to use. Either a vector of index, e.g. strata.subset=c(1,3),
or a character vector naming which strata to use. See details.
- median.only
Logical to plot only median and no quantiles for model and data (FALSE=default)
- bin.idv
Method for computed idv value for plotting bin summary values.
Set to "median" to use median of independent variable in each bin on x-axis (default),
or set to "midpoint" to use midpoint of bins on x-axis.
- percentile
percentile to use, default=10 will display 10
Percentile argument must match columns included in the vpcresult file.
- fy
transformation function for y-axis, default to identity function (f(y)=y).
- fx
transformation function for x-axis, default to identity function (f(x)=x)
- xlab
label for x-axis, default is IDV as found in vpcresultfile, passed to labs.
- ylab
label for y-axis, default is DV as found in vpcresultfile, passed to labs.
- col.data
color for data points, passed to geom_point, default="gray20"
- cex.data
cex for data points, passed to geom_point, default=1
- pch.data
plot symbol (pch) for data points, passed to geom_point, default=19
- alpha.data
alpha for plotting of data points, passed to geom_point, default=0.5
- col.line
line color for low quartile, median, and high quartile of data,
passed to geom_line, default="gray20"
- lwd.line
line width (lwd) for low quartile, median, and high quartile of data, passed to geom_line, default=1
- lty.line
line type (lty) for low quartile, median, and high quartile of data, passed to geom_line,
should be vector of length 3, default=c(2,1,2)
- col.segm
Color of CI regions (low, median and high) for model, passed to geom_polygon,
should be vector of length 3, default=c("steelblue", "gray50", "steelblue")
- alpha.segm
alpha of CI regions (low, median and high) for model, passed to geom_polygon, default=0.6
- type
type of VPC plot:
1=display model regions only,
2=as 1 + lines (low, median and high) of data,
3= as 2 + points for data.
type=0 can also be used and then no graph is produced but instead a list with 2 dataframes is returned.
one for the vpcresult and on for the observed data in the vpctab file.
- panel.height.censored
Height for BLQ ALQ panels. Height is relative to height of Un-cenored panel, default=0.25
- censoring.labels
Character vector used as labels for panels when VPC have either BLQ or ALQ data
Default set to c("ALQ","BLQ"). NOTE: must be character vector of length 2
- ignore.censoring
Ignore any censoring results in VPC result file (BLQ and ALQ), defult=FALSE
- control
an optional list of control settings. See GOF.control for the names of the settable control values and their effect.