nprcgenekeepr (version 1.0.5)

addParents: Add parents

Description

Pedigree curation function Given a pedigree, find any IDs listed in the "sire" or "dam" columns that lack their own line entry and generate one.

Usage

addParents(ped)

Arguments

ped

datatable that is the `Pedigree`. It contains pedigree information including the IDs listed in candidates.

Value

An updated pedigree with entries added as necessary. Entries have the id and sex specified; all remaining columns are filled with NA.

Details

This must be run after to addUIds since the IDs made there are used by addParents

Examples

# NOT RUN {
pedTwo <- data.frame(id = c("d1", "s2", "d2", "o1", "o2", "o3", "o4"),
                     sire = c(NA, NA, NA, "s1", "s1", "s2", "s2"),
                     dam = c(NA, NA, NA, "d1", "d2", "d2", "d2"),
                     sex = c("F", "M", "F", "F", "F", "F", "M"),
                     stringsAsFactors = FALSE)
newPed <- addParents(pedTwo)
newPed
# }
# NOT RUN {
# }