nprcgenekeepr (version 1.0.5)

calculateSexRatio: Calculates the sex ratio (number of non-males / number of males) given animal Ids and their pedigree

Description

The Males are counted when the ped$sex value is "M". When females are counted when the ped$sex value is not "M". This means animals with ambiguous sex are counted with the females.

Usage

calculateSexRatio(ids, ped, additionalMales = 0, additionalFemales = 0)

Arguments

ids

character vector of animal Ids

ped

datatable that is the `Pedigree`. It contains pedigree information including the IDs listed in candidates.

additionalMales

Integer value of males to add to those within the group when calculating the ratio. Ignored if calculated ratio is 0 or Inf. Default is 0.

additionalFemales

Integer value of females to add to those within the group when calculating the ratio. Ignored if calculated ratio is 0 or Inf. Default is 0.

Value

Numeric value of sex ratio of the animals provided.

Examples

# NOT RUN {
library(nprcgenekeepr)
data("qcBreeders")
data("pedWithGenotype")
available <- c("JGPN6K", "8KM1MP", "I9TQ0T", "Q0RGP7", "VFS0XB", "CQC133",
               "2KULR3", "HOYW0S", "FHV13N", "OUM6QF", "6Z7MD9", "CFPEEU",
               "HLI95R", "RI0O7F", "7M51X5", "DR5GXB", "170ZTZ", "C1ICXL")
nonMales <- c("JGPN6K", "8KM1MP", "I9TQ0T", "Q0RGP7", "CQC133",
              "2KULR3", "HOYW0S", "FHV13N", "OUM6QF", "6Z7MD9", "CFPEEU",
              "HLI95R", "RI0O7F", "7M51X5", "DR5GXB", "170ZTZ", "C1ICXL")
male <- "VFS0XB"
calculateSexRatio(ids = male, ped = pedWithGenotype)
calculateSexRatio(ids = nonMales, ped = pedWithGenotype)
calculateSexRatio(ids = available, ped = pedWithGenotype)
calculateSexRatio(ids = available, ped = pedWithGenotype,
                        additionalMales = 1)
calculateSexRatio(ids = available, ped = pedWithGenotype,
                  additionalFemales = 1)
calculateSexRatio(ids = available, ped = pedWithGenotype,
                  additionalMales = 1, additionalFemales = 1)
calculateSexRatio(ids = nonMales, ped = pedWithGenotype,
                  additionalMales = 1, additionalFemales = 0)
calculateSexRatio(ids = character(0), ped = pedWithGenotype,
                additionalMales = 1, additionalFemales = 0)
# }
# NOT RUN {
# }