nprcgenekeepr (version 1.0.5)

examplePedigree: examplePedigree is a pedigree object created by qcStudbook

Description

Represents pedigree from ExamplePedigree.csv.

id

-- character column of animal IDs

sire

-- the male parent of the animal indicated by the id column. Unknown sires are indicated with NA

dam

-- the female parent of the animal indicated by the id column.Unknown dams are indicated with NA

sex

-- factor with levels: "M", "F", "U". Sex specifier for an individual.

gen

-- generation number (integers beginning with 0 for the founder generation) of the animal indicated by the id column.

birth

-- Date vector of birth dates

exit

-- Date vector of exit dates

age

-- numerical vector of age in years

ancestry

-- character vector or NA with free-form text providing information about the geographic population of origin.

origin

-- character vector or NA (optional) that indicates the name of the facility that the individual was imported from if other than local.

status

-- character vector or NA. Flag indicating an individual's status as alive, dead, sold, etc. Transformed to factor levels: ALIVE, DECEASED, SHIPPED, UNKNOWN. Vector of standardized status codes with the possible values ALIVE, DECEASED, SHIPPED, or UNKNOWN

recordStats

-- character vector with value of "added" or "original".

Usage

examplePedigree

Format

An object of class data.frame with 3694 rows and 12 columns.

Examples

# NOT RUN {
library(nprcgenekeepr)
data("examplePedigree")
exampleTree <- createPedTree(examplePedigree)
exampleLoops <- findLoops(exampleTree)
# }