Pedigree curation function
getPossibleCols()@return A character vector of the possible columns that can be in a studbook. The possible columns are as follows:
id -- character vector with unique identifier for an individual
sire -- character vector with unique identifier for an
individual's father (NA if unknown).
dam -- character vector with unique identifier for an
individual's mother (NA if unknown).
sex -- factor levels: "M", "F", "U" Sex specifier for an individual
gen -- integer vector with the generation number of the individual
birth -- Date or NA (optional) with the individual's birth
date
exit -- Date or NA (optional) with the individual's exit date
(death, or departure if applicable)
ancestry -- character vector or NA (optional) that indicates
the geographic population to which the individual belongs.
age -- numeric or NA (optional) indicating the individual's
current age or age at exit.
population -- an optional logical argument indicating whether or not
the id is part of the extant population.
origin -- character vector or NA (optional) that indicates
the name of the facility that the individual was imported from.
NA indicates the individual was not imported.
status -- an optional factor indicating the status of an individual
with levels ALIVE, DEAD, and SHIPPED.
condition -- character vector or NA (optional) that indicates
the restricted status of an animal. "Nonrestricted" animals
are generally assumed to be naive.
spf -- character vector or NA (optional) indicating the
specific pathogen-free status of an individual.
vasxOvx -- character vector indicating the vasectomy/ovariectomy
status of an animal where NA indicates an intact animal and all other
values indicate surgical alteration.
pedNum -- integer vector indicating generation numbers for each id, starting at 0 for individuals lacking IDs for both parents.
# NOT RUN {
library(nprcgenekeepr)
getPossibleCols()
# }
# NOT RUN {
# }
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