nprcgenekeepr (version 1.0.5)

removePotentialSires: Removes potential sires from list of Ids

Description

@return character vector of Ids with any potential sire Ids removed.

Usage

removePotentialSires(ids, minAge, ped)

Arguments

ids

character vector of IDs of the animals

minAge

integer value indicating the minimum age to consider in group formation. Pairwise kinships involving an animal of this age or younger will be ignored. Default is 1 year.

ped

dataframe that is the `Pedigree`. It contains pedigree information including the IDs listed in candidates.

Examples

# NOT RUN {
library(nprcgenekeepr)
qcBreeders <- nprcgenekeepr::qcBreeders
pedWithGenotype <- nprcgenekeepr::pedWithGenotype
noSires <- removePotentialSires(ids = qcBreeders, minAge = 2,
                                ped = pedWithGenotype)
sires <- getPotentialSires(qcBreeders, minAge = 2, ped = pedWithGenotype)
pedWithGenotype[pedWithGenotype$id %in% noSires, c("sex", "age")]
pedWithGenotype[pedWithGenotype$id %in% sires, c("sex", "age")]
# }
# NOT RUN {
# }