str_detect_fixed_all

input vector. This must be an atomic vector and will be
coerced to a character vector.

strings

patterns to look for, as defined by a POSIX regular
expression. See fixed, ignore.case and perl sections
for details. See Extended Regular Expressions for how to use regular
expressions for matching.

patterns

if TRUE NA values are trimmed out of <code>strings</code> and
<code>patterns</code> before comparison

ignore_na

further arguments for stri_detect_fixed

Returns a logical vector with results of stri_detect() for each pattern in
second parameters character vector.

Provides genetic tools for colony management and is a derivation
of the work in Amanda Vinson and Michael J Raboin (2015)
<https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4671785/> "A Practical
Approach for Designing Breeding Groups to Maximize Genetic Diversity in a
Large Colony of Captive Rhesus Macaques ('Macaca' 'mulatto')".
It provides a 'Shiny' application with an exposed API.
The application supports five groups of functions:
(1) Quality control of studbooks contained in text files or 'Excel'
workbooks and of pedigrees within 'LabKey' Electronic Health Records
(EHR);
(2) Creation of pedigrees from a list of animals using the 'LabKey' EHR
integration;
(3) Creation and display of an age by sex pyramid plot of the living
animals within the designated pedigree;
(4) Generation of genetic value analysis reports; and
(5) Creation of potential breeding groups with and without proscribed sex
ratios and defined maximum kinships.

R. Mark Sharp

str_detect_fixed_all: Returns a logical vector with results of stri_detect() for each pattern in second parameters character vector.

Description

Usage

Arguments