oce (version 1.4-0)

drawPalette: Draw a palette, leaving margins suitable for accompanying plot

Description

In the normal use, drawPalette() draws an image palette near the right-hand side of the plotting device, and then adjusts the global margin settings in such a way as to cause the next plot to appear (with much larger width) to the left of the palette. The function can also be used, if zlim is not provided, to adjust the margin without drawing anything; this is useful in lining up the x axes of a stack of plots, some some of which will have palettes and others not.

Usage

drawPalette(
  zlim,
  zlab = "",
  breaks,
  col,
  colormap,
  mai,
  cex = par("cex"),
  pos = 4,
  las = 0,
  labels = NULL,
  at = NULL,
  levels,
  drawContours = FALSE,
  plot = TRUE,
  fullpage = FALSE,
  drawTriangles = FALSE,
  axisPalette,
  tformat,
  debug = getOption("oceDebug"),
  ...
)

Arguments

zlim

two-element vector containing the lower and upper limits of z. This may also be a vector of any length exceeding 1, in which case its range is used.

zlab

label for the palette scale.

breaks

optional numeric vector of the z values for breaks in the color scheme. If colormap is provided, it takes precedence over breaks and col.

col

optional argument, either a vector of colors corresponding to the breaks, of length 1 less than the number of breaks, or a function specifying colors. If col is not provided, and if colormap is also not provided, then col defaults to oceColorsViridis(). If colormap is provided, it takes precedence over breaks and col.

colormap

an optional color map as created by colormap(). If colormap is provided, it takes precedence over breaks and col.

mai

margins for palette, as defined in the usual way; see par(). If not given, reasonable values are inferred from the existence of a non-blank zlab.

cex

numeric character expansion value for text labels

pos

an integer indicating the location of the palette within the plotting area, 1 for near the bottom, 2 for near the left-hand side, 3 for near the top side, and 4 (the default) for near the right-hand side.

las

optional argument, passed to axis(), to control the orientation of numbers along the axis. As explained in the help for par(), the meaning of las is as follows: las=0 (the default) means to put labels parallel to the axis, las=1 means horizontal (regardless of axis orientation), las=2 means perpendicular to the axis, and las=3 means to vertical (regardless of axis orientation). Note that the automatic computation of margin spacing parameter mai assumes that las=0, and so for other cases, the user may need to specify the mai argument directly.

labels

optional vector of labels for ticks on palette axis (must correspond with at)

at

optional vector of positions for the labels

levels

optional contour levels, in preference to breaks values, to be added to the image if drawContours is TRUE.

drawContours

logical value indicating whether to draw contours on the palette, at the color breaks.

plot

logical value indicating whether to plot the palette, the default, or whether to just alter the margins to make space for where the palette would have gone. The latter case may be useful in lining up plots, as in example 1 of “Examples”.

fullpage

logical value indicating whether to draw the palette filling the whole plot width (apart from mai, of course). This can be helpful if the palette panel is to be created with layout(), as illustrated in the “Examples”.

drawTriangles

logical value indicating whether to draw triangles on the top and bottom of the palette. If a single value is provided, it applies to both ends of the palette. If a pair is provided, the first refers to the lower range of the palette, and the second to the upper range.

axisPalette

optional replacement function for axis(), e.g. for exponential notation on large or small values.

tformat

optional format for axis labels, if the variable is a time type (ignored otherwise).

debug

a flag that turns on debugging. Set to 1 to get a moderate amount of debugging information, or to 2 to get more.

…

optional arguments passed to plotting functions.

Value

None.

Use with multi-panel plots

An important consequence of the margin adjustment is that multi-panel plots require that the initial margin be stored prior to the first call to drawPalette(), and reset after each palette-plot pair. This method is illustrated in “Examples”.

Details

The plot positioning is done entirely with margins, not with par(mfrow) or other R schemes for multi-panel plots. This means that the user is free to use those schemes without worrying about nesting or conflicts.

See Also

This is used by imagep().

Examples

# NOT RUN {
library(oce)
par(mgp=getOption("oceMgp"))

## 1. A three-panel plot
par(mfrow=c(3, 1), mar=c(3, 3, 1, 1))
omar <- par('mar')                 # save initial margin

## 1a. top panel: simple case with Viridis scheme
drawPalette(zlim=c(0, 1), col=oce.colorsViridis(10))
plot(1:10, 1:10, col=oce.colorsViridis(10)[1:10],pch=20,cex=3,xlab='x', ylab='y')
par(mar=omar)                      # reset margin

## 1b. middle panel: colormap
cm <- colormap(name="gmt_globe")
drawPalette(colormap=cm)
icol <- seq_along(cm$col)
plot(icol, cm$breaks[icol], pch=20, cex=2, col=cm$col,
     xlab="Palette index", ylab="Palette breaks")
par(mar=omar)                      # reset margin

## 1c. bottom panel: space for palette (to line up graphs)
drawPalette(plot=FALSE)
plot(1:10, 1:10, col=oce.colorsViridis(10)[1:10],pch=20,cex=3,xlab='x', ylab='y')
par(mar=omar)                      # reset margin

# 2. Use layout to mimic the action of imagep(), with the width
# of the palette region being 14 percent of figure width.
d <- 0.14
layout(matrix(1:2,nrow=1), widths=c(1-d,d))
image(volcano, col=oce.colorsViridis(100), zlim=c(90, 200))
contour(volcano, add=TRUE)
drawPalette(c(90, 200), fullpage=TRUE, col=oce.colorsViridis)
# }