BeadStudioSet-class

BafLrrSet-class

BeadStudioSet

baf,BeadStudioSet-method

baf<-,BeadStudioSet-method

baf<-

copyNumber,BeadStudioSet-method

copyNumber<-,BeadStudioSet,ANY-method

coerce,BeadStudioSet,data.frame-method

initialize,BeadStudioSet-method

lrr,BeadStudioSet-method

lrr<-,BeadStudioSet-method

lrr<-,BeadStudioSet,ANY-method

lrr<-,BafLrrSet-method

lrr<-,BafLrrSet,ANY-method

lrr<-

show,BeadStudioSet-method

updateObject,BeadStudioSet-method

A container for log R ratios and B allele frequencies from SNP arrays.

classes

A package to analyze oligonucleotide arrays
        (expression/SNP/tiling/exon) at probe-level. It currently
        supports Affymetrix (CEL files) and NimbleGen arrays (XYS
        files).

Benilton Carvalho

oligo

Preprocessing tools for oligonucleotide arrays

BeadStudioSet-class function

Objects can be created by calls of the form <code>new("BeadStudioSet", assayData, phenoData, featureData, experimentData, annotation, protocolData, baf, lrr, ...)</code>.

Objects from the Class

Class <code>"<links4class>gSet</links4class>"</code>, directly.
Class <code>"<links4class>eSet</links4class>"</code>, by class "gSet", distance 2.
Class <code>"<links4class>VersionedBiobase</links4class>"</code>, by class "gSet", distance 3.
Class <code>"<links4class>Versioned</links4class>"</code>, by class "gSet", distance 4.

Extends

Class <code>"BeadStudioSet"</code>

BeadStudioSet-class: Class `"BeadStudioSet"`

Description

Arguments

Objects from the Class

Extends

Examples