oligo (version 1.36.1)

CopyNumberSet-class: Class "CopyNumberSet"

Description

Container for storing total copy number estimates and confidence scores of the copy number estimates.

Objects from the Class

Objects can be created by calls of the form new("CopyNumberSet", assayData, phenoData, featureData, experimentData, annotation, protocolData, copyNumber, cnConfidence, ...).

Extends

Class "eSet", directly. Class "VersionedBiobase", by class "eSet", distance 2. Class "Versioned", by class "eSet", distance 3.

See Also

For genotyping platforms, total copy number estimates and genotype calls can be stored in the oligoSnpSet class.

Examples

showClass("CopyNumberSet")
cnset <- new("CopyNumberSet")
ls(Biobase::assayData(cnset))