oligo (version 1.36.1)

GenomeAnnotatedDataFrame-class: Class "GenomeAnnotatedDataFrame"

Description

AnnotatedDataFrame with genomic coordinates (chromosome, position)

Extends

Class "AnnotatedDataFrame", directly. Class "Versioned", by class "AnnotatedDataFrame", distance 2.

See Also

AnnotatedDataFrame

Examples

new("GenomeAnnotatedDataFrame")
if(require("pd.mapping50k.hind240") && require("pd.mapping50k.xba240") && require("SNPchip")){
	data(locusLevelData)
	gd <- GenomeAnnotatedDataFrameFrom(locusLevelData[["genotypes"]],
					       annotationPkg=locusLevelData[["platform"]],
					       genome="hg19")
        arm <- getArm(gd, "hg19")
}