SnpSet2-class

calls,SnpSet2-method

calls<-,SnpSet2,matrix-method

confs,SnpSet2-method

confs<-,SnpSet2,matrix-method

exprs,SnpSet2-method

initialize,SnpSet2-method

A container for genotype calls and confidence scores.  Similar to the
  <code>SnpSet</code> class in <pkg>Biobase</pkg>, but <code>SnpSet2</code> extends
  <code>gSet</code> directly whereas <code>SnpSet</code> extends <code>eSet</code>.
  Useful properties of <code>gSet</code> include the <code>genome</code> slot and
  the <code>GenomeAnnotatedDataFrame</code>.

classes

A package to analyze oligonucleotide arrays
        (expression/SNP/tiling/exon) at probe-level. It currently
        supports Affymetrix (CEL files) and NimbleGen arrays (XYS
        files).

Benilton Carvalho

oligo

Preprocessing tools for oligonucleotide arrays

SnpSet2-class function

Objects can be created by calls of the form <code>new("SnpSet2", assayData, phenoData, featureData, experimentData, annotation, protocolData, call, callProbability, genome, ...)</code>.

Objects from the Class

Class <code>"<links4class>gSet</links4class>"</code>, directly.
Class <code>"<links4class>eSet</links4class>"</code>, by class "gSet", distance 2.
Class <code>"<links4class>VersionedBiobase</links4class>"</code>, by class "gSet", distance 3.
Class <code>"<links4class>Versioned</links4class>"</code>, by class "gSet", distance 4.

SnpSet2-class: Class `"SnpSet2"`

Description

Arguments

Objects from the Class

Extends

See Also

Examples