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oligo (version 1.36.1)

SummarizedExperiment-methods: Methods for RangedSummarizedExperiment objects

Description

Methods for RangedSummarizedExperiment.

Usage

## S3 method for class 'RangedSummarizedExperiment':
baf(object)
## S3 method for class 'RangedSummarizedExperiment':
chromosome(object,...)
## S3 method for class 'RangedSummarizedExperiment':
isSnp(object, ...)
## S3 method for class 'RangedSummarizedExperiment':
lrr(object)

Arguments

...
ignored

Details

baf and lrr are accessors for the B allele frequencies and log R ratio assays (matrices or arrays), respectively,

chromosome returns the seqnames of the rowRanges.

isSnp returns a logical vector for each marker in rowRanges indicating whether the marker targets a SNP (nonpolymorphic regions are FALSE).

See Also

RangedSummarizedExperiment