oligo (version 1.36.1)

justSNPRMA: Summarization of SNP data

Description

This function implements the SNPRMA method for summarization of SNP data. It works directly with the CEL files, saving memory.

Usage

justSNPRMA(filenames, verbose = TRUE, phenoData = NULL, normalizeToHapmap = TRUE)

Arguments

filenames

character vector with the filenames.

verbose

logical flag for verbosity.

phenoData

a phenoData object or NULL

normalizeToHapmap

Normalize to Hapmap? Should always be TRUE, but it's kept here for future use.

Value

• SnpQSet or a SnpCnvQSet, depending on the array type.

Examples

## snprmaResults <- justSNPRMA(list.celfiles())