oligo (version 1.36.1)

oligoSet: An example instance of oligoSnpSet class

Description

An example instance of the oligoSnpSet class

Usage

data(oligoSetExample)

source

Created from the simulated locusLevelData provided in this package.

See Also

locusLevelData

Examples

## 'oligoSetExample' created by the following
		data(locusLevelData)
		oligoSet <- new("oligoSnpSet",
				copyNumber=integerMatrix(log2(locusLevelData[["copynumber"]]/100), 100),
				call=locusLevelData[["genotypes"]],
				callProbability=locusLevelData[["crlmmConfidence"]],
				annotation=locusLevelData[["platform"]],
				genome="hg19")
		oligoSet <- oligoSet[!is.na(chromosome(oligoSet)), ]
		oligoSet <- oligoSet[chromosome(oligoSet) < 3, ]
	data(oligoSetExample)
	oligoSet