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Creates a new sequence by adding markers from a predetermined one. The markers are added in the end of the sequence.
add_marker(input.seq, mrks)
An object of class sequence, which is a list containing the following components:
sequence
a vector containing the (ordered) indices of markers in the sequence, according to the input file.
vector
a vector with the linkage phases between markers in the sequence, in corresponding positions. -1 means that there are no defined linkage phases.
-1
a vector with the recombination fractions between markers in the sequence. -1 means that there are no estimated recombination fractions.
log-likelihood of the corresponding linkage map.
name of the object of class onemap with the raw data.
onemap
name of the object of class rf_2pts with the 2-point analyses.
rf_2pts
@author Marcelo Mollinari, mmollina@usp.br
an object of class sequence.
a vector containing the markers to be added from the sequence.
drop_marker
data(onemap_example_out) twopt <- rf_2pts(onemap_example_out) all_mark <- make_seq(twopt,"all") groups <- group(all_mark) (LG1 <- make_seq(groups,1)) (LG.aug<-add_marker(LG1, c(4,7)))
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