Add the redundant markers removed by create_data_bins function
add_redundants(sequence, onemap.obj, bins)
New sequence object of class sequence
, which is a list containing the
following components:
a vector
containing the
(ordered) indices of markers in the sequence, according to the input file.
a vector
with the linkage phases between markers
in the sequence, in corresponding positions. -1
means that there are
no defined linkage phases.
a vector
with the
recombination frequencies between markers in the sequence. -1
means
that there are no estimated recombination frequencies.
log-likelihood of the corresponding linkage map.
object of class onemap
with the raw
data.
object of class rf_2pts
with the
2-point analyses.
object of class sequence
object of class onemap.obj
before redundant markers were removed
object of class onemap_bin
Cristiane Taniguti, chtaniguti@tamu.edu
find_bins