An object of class onemap, i.e., a list with the following
components:
geno
a matrix with integers indicating the genotypes
read for each marker. Each column contains data for a marker and each row
represents an individual.
n.ind
number of individuals.
n.mar
number of markers.
segr.type
a vector with the
segregation type of each marker, as strings.
segr.type.num
a
vector with the segregation type of each marker, represented in a
simplified manner as integers, i.e. 1 corresponds to markers of type
"A"; 2 corresponds to markers of type "B1.5"; 3 corresponds
to markers of type "B2.6"; 4 corresponds to markers of type
"B3.7"; 5 corresponds to markers of type "C.8"; 6 corresponds
to markers of type "D1" and 7 corresponds to markers of type
"D2". Markers for F2 intercrosses are coded as 1; all other crosses
are left as NA.
input
the name of the input file.
n.phe
number of phenotypes.
pheno
a matrix with phenotypic
values. Each column contains data for a trait and each row represents an
individual.
Given a onemap_bin object,
creates a new data set where the redundant markers are
collapsed into bins and represented by the marker with the lower
amount of missing data among those on the bin.