Filter markers based on 2pts distance
filter_2pts_gaps(input.seq, max.gap = 10)New sequence object of class sequence, which is a list containing the
following components:
a vector containing the
(ordered) indices of markers in the sequence, according to the input file.
a vector with the linkage phases between markers
in the sequence, in corresponding positions. -1 means that there are
no defined linkage phases.
a vector with the
recombination frequencies between markers in the sequence. -1 means
that there are no estimated recombination frequencies.
log-likelihood of the corresponding linkage map.
object of class onemap with the raw
data.
object of class rf_2pts with the
2-point analyses.
object of class sequence with ordered markers
maximum gap measured in kosambi centimorgans allowed between adjacent markers. Markers that presents the defined distance between both adjacent neighbors will be removed.
Cristiane Taniguti, chtaniguti@tamu.edu