generate_overlapping_batches

Function to divide the sequence in batches with user defined size

Analysis of molecular marker data from model (backcrosses,
F2 and recombinant inbred lines) and non-model systems (i. e.
outcrossing species). For the later, it allows statistical
analysis by simultaneously estimating linkage and linkage
phases (genetic map construction) according to Wu et al. (2002)
<doi:10.1006/tpbi.2002.1577>. All analysis are based on multipoint
approaches using hidden Markov models.

Cristiane Taniguti

onemap

Construction of Genetic Maps in Experimental Crosses

Gabriel Margarido

Marcelo Mollinari

Getulio Ferreira

Rodrigo Amadeu

Karl Broman

Katharine Preedy

Bastian Schiffthaler

Augusto Garcia

generate_overlapping_batches function

<dl><dt>input.seq</dt>
<dd>an object of class <code>sequence</code>.</dd>
<dt>size</dt>
<dd>The center size around which an optimum is to be searched</dd>
<dt>overlap</dt>
<dd>The desired overlap between batches</dd></dl>

Arguments

Function to divide the sequence in batches with user defined size — generate_overlapping_batches

<dl>

<dt>input.seq</dt>
<dd>an object of class <code>sequence</code>.</dd>


<dt>size</dt>
<dd>The center size around which an optimum is to be searched</dd>


<dt>overlap</dt>
<dd>The desired overlap between batches</dd>

</dl>

Function to divide the sequence in batches with user defined size

generate_overlapping_batches: Function to divide the sequence in batches with user defined size

Description

Usage

Arguments