pick_batch_sizes

Suggest an optimal batch size value for use in
<code>map_overlapping_batches</code>

utilities

Analysis of molecular marker data from model (backcrosses,
F2 and recombinant inbred lines) and non-model systems (i. e.
outcrossing species). For the later, it allows statistical
analysis by simultaneously estimating linkage and linkage
phases (genetic map construction) according to Wu et al. (2002)
<doi:10.1006/tpbi.2002.1577>. All analysis are based on multipoint
approaches using hidden Markov models.

Cristiane Taniguti

onemap

Construction of Genetic Maps in Experimental Crosses

Gabriel Margarido

Marcelo Mollinari

Getulio Ferreira

Rodrigo Amadeu

Karl Broman

Katharine Preedy

Bastian Schiffthaler

Augusto Garcia

pick_batch_sizes function

<dl><dt>input.seq</dt>
<dd>an object of class <code>sequence</code>.</dd>
<dt>size</dt>
<dd>The center size around which an optimum is to be searched</dd>
<dt>overlap</dt>
<dd>The desired overlap between batches</dd>
<dt>around</dt>
<dd>The range around the center which is maximally allowed
to be searched.</dd></dl>

Arguments

Bastian Schiffthaler, <a href="/link/bastian.schiffthaler%40umu.se?package=onemap&version=3.0.0" data-mini-rdoc="onemap::bastian.schiffthaler@umu.se">bastian.schiffthaler@umu.se</a>

Author

Picking optimal batch size values — pick_batch_sizes

<dl>

<dt>input.seq</dt>
<dd>an object of class <code>sequence</code>.</dd>


<dt>size</dt>
<dd>The center size around which an optimum is to be searched</dd>


<dt>overlap</dt>
<dd>The desired overlap between batches</dd>


<dt>around</dt>
<dd>The range around the center which is maximally allowed
to be searched.</dd>

</dl>

Bastian Schiffthaler, <a href='mailto:bastian.schiffthaler@umu.se'>bastian.schiffthaler@umu.se</a>

pick_batch_sizes: Picking optimal batch size values

Description

Usage

Value

Arguments

Author

See Also

Examples