onemap (version 3.2.0)

parents_haplotypes: Generates data.frame with parents estimated haplotypes

Description

Generates data.frame with parents estimated haplotypes

Usage

parents_haplotypes(
  ...,
  group_names = NULL,
  map.function = "kosambi",
  ref_alt_alleles = FALSE
)

Value

data.frame with group ID (group), marker number (mk.number) and names (mk.names), position in centimorgan (dist) and parents haplotypes (P1_1, P1_2, P2_1, P2_2)

Arguments

...

objects of class sequence

group_names

vector of characters defining the group names

map.function

"kosambi" or "haldane" according to which was used to build the map

ref_alt_alleles

TRUE to return parents haplotypes as reference and alternative ref_alt_alleles codification

Author

Getulio Caixeta Ferreira,

Cristiane Taniguti,

Examples

# \donttest{
data("onemap_example_out")
twopts <- rf_2pts(onemap_example_out)
lg1 <- make_seq(twopts, 1:5)
lg1.map <- map(lg1)
parents_haplotypes(lg1.map)
# }