plot_genome_vs_cm

Provides simple genetic to physical ggplot.

Analysis of molecular marker data from model (backcrosses,
F2 and recombinant inbred lines) and non-model systems (i. e.
outcrossing species). For the later, it allows statistical
analysis by simultaneously estimating linkage and linkage
phases (genetic map construction) according to Wu et al. (2002)
<doi:10.1006/tpbi.2002.1577>. All analysis are based on multipoint
approaches using hidden Markov models.

Cristiane Taniguti

onemap

Construction of Genetic Maps in Experimental Crosses

Gabriel Margarido

Marcelo Mollinari

Getulio Ferreira

Rodrigo Amadeu

Jeekin Lau

Karl Broman

Katharine Preedy

Bastian Schiffthaler

Augusto Garcia

plot_genome_vs_cm function

<dl><dt>map.list</dt>
<dd>a map, i.e. an object of class <code>sequence</code> with a
predefined order, linkage phases, recombination fraction and likelihood;
also it could be a list of maps.</dd>
<dt>mapping_function</dt>
<dd>either "kosambi" or "haldane"</dd>
<dt>group.names</dt>
<dd>vector with group name for each sequence object in the map.list</dd></dl>

Arguments

Jeekin Lau, <a href="/link/jeekinlau%40gmail.com?package=onemap&version=3.2.0" data-mini-rdoc="onemap::jeekinlau@gmail.com">jeekinlau@gmail.com</a>

Author

Draws a physical vs cM map — plot_genome_vs_cm

<dl>

<dt>map.list</dt>
<dd>a map, i.e. an object of class <code>sequence</code> with a
predefined order, linkage phases, recombination fraction and likelihood;
also it could be a list of maps.</dd>


<dt>mapping_function</dt>
<dd>either "kosambi" or "haldane"</dd>


<dt>group.names</dt>
<dd>vector with group name for each sequence object in the map.list</dd>

</dl>

Jeekin Lau, <a href='mailto:jeekinlau@gmail.com'>jeekinlau@gmail.com</a>

plot_genome_vs_cm: Draws a physical vs cM map

Description

Usage

Value

Arguments

Author