save_onemap_sequences

The onemap sequence object contains everything users need to reproduce the complete analysis:
the input onemap object, the rf_2pts result, and the sequence genetic distance and marker order.
Therefore, a list of sequences is the only object users need to save to be able to recover all analysis.
But simple saving the list of sequences will save many redundant objects. This redundancy is only considered by R
when saving the object. For example, one input object and the rf_2pts result will be saved for every sequence.

Analysis of molecular marker data from model (backcrosses,
F2 and recombinant inbred lines) and non-model systems (i. e.
outcrossing species). For the later, it allows statistical
analysis by simultaneously estimating linkage and linkage
phases (genetic map construction) according to Wu et al. (2002)
<doi:10.1006/tpbi.2002.1577>. All analysis are based on multipoint
approaches using hidden Markov models.

Cristiane Taniguti

onemap

Construction of Genetic Maps in Experimental Crosses

Gabriel Margarido

Marcelo Mollinari

Getulio Ferreira

Rodrigo Amadeu

Jeekin Lau

Karl Broman

Katharine Preedy

Bastian Schiffthaler

Augusto Garcia

save_onemap_sequences function

<dl><dt>sequences.list</dt>
<dd>list of <code>sequence</code> objects</dd>
<dt>filename</dt>
<dd>name of the output file (Ex: my_beautiful_map.RData)</dd></dl>

Arguments

Save a list of onemap sequence objects — save_onemap_sequences

<dl>

<dt>sequences.list</dt>
<dd>list of <code>sequence</code> objects</dd>


<dt>filename</dt>
<dd>name of the output file (Ex: my_beautiful_map.RData)</dd>

</dl>

Save a list of onemap sequence objects

save_onemap_sequences: Save a list of onemap sequence objects

Description

Usage

Arguments