summary_maps_onemap

Create table with summary information about the linkage map

Analysis of molecular marker data from model (backcrosses,
F2 and recombinant inbred lines) and non-model systems (i. e.
outcrossing species). For the later, it allows statistical
analysis by simultaneously estimating linkage and linkage
phases (genetic map construction) according to Wu et al. (2002)
<doi:10.1006/tpbi.2002.1577>. All analysis are based on multipoint
approaches using hidden Markov models.

Cristiane Taniguti

onemap

Construction of Genetic Maps in Experimental Crosses

Gabriel Margarido

Marcelo Mollinari

Getulio Ferreira

Rodrigo Amadeu

Jeekin Lau

Karl Broman

Katharine Preedy

Bastian Schiffthaler

Augusto Garcia

summary_maps_onemap function

<dl><dt>map.list</dt>
<dd>a map, i.e. an object of class <code>sequence</code> with a
predefined order, linkage phases, recombination fraction and likelihood;
also it could be a list of maps.</dd>
<dt>mapping_function</dt>
<dd>either "kosambi" or "haldane"</dd></dl>

Arguments

Jeekin Lau, <a href="/link/jeekinlau%40gmail.com?package=onemap&version=3.2.0" data-mini-rdoc="onemap::jeekinlau@gmail.com">jeekinlau@gmail.com</a>

Author

Create table with summary information about the linkage map — summary_maps_onemap

<dl>

<dt>map.list</dt>
<dd>a map, i.e. an object of class <code>sequence</code> with a
predefined order, linkage phases, recombination fraction and likelihood;
also it could be a list of maps.</dd>


<dt>mapping_function</dt>
<dd>either "kosambi" or "haldane"</dd>

</dl>

Jeekin Lau, <a href='mailto:jeekinlau@gmail.com'>jeekinlau@gmail.com</a>

summary_maps_onemap: Create table with summary information about the linkage map

Description

Usage

Value

Arguments

Author