ontoCAT (version 1.24.0)

getAllTermIds: Returns accessions of all ontology terms

Description

Returns accessions of all loaded ontology terms

Usage

getAllTermIds(object)

Arguments

object

instance of the Ontology class

Value

Returns accession strings of all terms from loaded ontology.

References

Adamusiak T, Burdett T, van der Velde K J, Abeygunawardena N, Antonakaki D, Parkinson H and Swertz M: OntoCAT -- a simpler way to access ontology resources. Available from Nature Precedings http://dx.doi.org/10.1038/npre.2010.4666.1 (2010) Malone J, Holloway E, Adamusiak T, Kapushesky M, Zheng J, Kolesnikov N, Zhukova A, Brazma A, Parkinson H: Modeling Sample Variables with an Experimental Factor Ontology. Bioinformatics 2010, 26(8):1112--1118 Experimental Factor Ontology http://www.ebi.ac.uk/efo Ontology Common API Tasks java library http://www.ontocat.org Java sources and javadocs: http://sourceforge.net/projects/ontocat/files/

See Also

Ontology and OntologyTerm

Examples

    file <- system.file("extdata", "cell.obo", package="ontoCAT")
    ontologyFromFile <- getOntology(file)
    getAllTermIds(ontologyFromFile)