getOntologyNoReasoning: Returns an instance of the ontology parser created from OWL or OBO file without reasining
Description
Loads the ontology described in OWL or OBO format from the local file or on the fly by using URL.
Usage
getOntologyNoReasoning(pathToURI)
Arguments
pathToURI
a character string giving the URL or local name of the file to load ontology from
Value
Returns an instance of the Ontology class.
References
Adamusiak T, Burdett T, van der Velde K J, Abeygunawardena N, Antonakaki D, Parkinson H and Swertz M: OntoCAT -- a simpler way to access ontology resources. Available from Nature Precedingshttp://dx.doi.org/10.1038/npre.2010.4666.1 (2010)
Malone J, Holloway E, Adamusiak T, Kapushesky M, Zheng J, Kolesnikov N, Zhukova A, Brazma A, Parkinson H: Modeling Sample Variables with an Experimental Factor Ontology. Bioinformatics 2010, 26(8):1112--1118
Experimental Factor Ontology http://www.ebi.ac.uk/efo
Ontology Common API Tasks java library http://www.ontocat.org
Java sources and javadocs: http://sourceforge.net/projects/ontocat/files/