check

Perform simple consistency checks on <code>ontology_index</code> object

Functions for reading ontologies into R as lists and manipulating sets of ontological terms - 'ontologyX: A suite of R packages for working with ontological data', Greene et al 2017 <doi:10.1093/bioinformatics/btw763>.

Daniel Greene

ontologyIndex

Reading Ontologies into R

check function

<dl><dt>ontology</dt>
<dd><code>ontology_index</code> object.</dd>
<dt>stop_if_invalid</dt>
<dd>Logical value determining whether the function should call <code>stop</code> and print an error message upon finding that the given <code>ontology_index</code> is in valid.</dd></dl>

Arguments

Check an ontology index object — check

<dl>

<dt>ontology</dt>
<dd><code>ontology_index</code> object.</dd>


<dt>stop_if_invalid</dt>
<dd>Logical value determining whether the function should call <code>stop</code> and print an error message upon finding that the given <code>ontology_index</code> is in valid.</dd>

</dl>

check: Check an ontology index object

Description

Usage

Arguments