get_term_descendancy_matrix

Get logical descendancy matrix for set of terms

Functions for reading ontologies into R as lists and manipulating sets of ontological terms - 'ontologyX: A suite of R packages for working with ontological data', Greene et al 2017 <doi:10.1093/bioinformatics/btw763>.

Daniel Greene

ontologyIndex

Reading Ontologies into R

get_term_descendancy_matrix function

<dl><dt>ontology</dt>
<dd><code>ontology_index</code> object.</dd>
<dt>terms</dt>
<dd>Character vector of ontological terms.</dd>
<dt>rows</dt>
<dd>Rows for resultant matrix (defaults to <code>terms</code>).</dd>
<dt>cols</dt>
<dd>Cols for resultant matrix (defaults to <code>terms</code>).</dd></dl>

Arguments

Get logical descendancy matrix for set of terms — get_term_descendancy_matrix

<dl>

<dt>ontology</dt>
<dd><code>ontology_index</code> object.</dd>


<dt>terms</dt>
<dd>Character vector of ontological terms.</dd>


<dt>rows</dt>
<dd>Rows for resultant matrix (defaults to <code>terms</code>).</dd>


<dt>cols</dt>
<dd>Cols for resultant matrix (defaults to <code>terms</code>).</dd>

</dl>

get_term_descendancy_matrix: Get logical descendancy matrix for set of terms

Description

Usage

Value

Arguments

Examples