get_term_info_content

Get information content of each term in a set of phenotypes

Functions for reading ontologies into R as lists and manipulating sets of ontological terms - 'ontologyX: A suite of R packages for working with ontological data', Greene et al 2017 <doi:10.1093/bioinformatics/btw763>.

Daniel Greene

ontologyIndex

Reading Ontologies into R

get_term_info_content function

<dl><dt>ontology</dt>
<dd><code>ontology_index</code> object.</dd>
<dt>term_sets</dt>
<dd>List of character vectors of ontological term IDs.</dd>
<dt>patch_missing</dt>
<dd>Logical indicating whether to include all ontology terms even if they're not present in the <code>term_sets</code> as if they had occurred once</dd></dl>

Arguments

Get information content of each term in a set of phenotypes — get_term_info_content

<dl>

<dt>ontology</dt>
<dd><code>ontology_index</code> object.</dd>


<dt>term_sets</dt>
<dd>List of character vectors of ontological term IDs.</dd>


<dt>patch_missing</dt>
<dd>Logical indicating whether to include all ontology terms even if they're not present in the <code>term_sets</code> as if they had occurred once</dd>

</dl>

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get_term_info_content: Get information content of each term in a set of phenotypes

Description

Usage

Value

Arguments

Examples