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openCyto (version 1.10.3)

templateGen: generate a partially complete csv template from the existing gating hierarchy

Description

To ease the process of replicating the existing (usually a manual one) gating schemes, this function populate an empty gating template with the 'alias', 'pop', 'parent' and 'dims' columns that exacted from an GatingHierarchy, and leave the other columns (e.g. `gating_method`) blank. So users can make changes to that template instead of writing from scratch.

Usage

templateGen(gh)

Arguments

gh
a GatingHierarchy likely parsed from a xml workspace

Value

  • a gating template in data.frame format that requires further edition after output to csv