SomaScan160410

This is based on panel used in sun18;textualpQTLdata.

datasets

internal

It aggregates protein panel data and metadata for protein quantitative
trait locus (pQTL) analysis using 'pQTLtools' (<https://jinghuazhao.github.io/pQTLtools/>).
The package includes data from affinity-based panels such as 'Olink' (<https://olink.com/>)
and 'SomaScan' (<https://somalogic.com/>), as well as mass spectrometry-based panels from
'CellCarta' (<https://cellcarta.com/>) and 'Seer' (<https://seer.bio/>). The metadata
encompasses updated annotations and publication details.

Jing Zhao

pQTLdata

A Collection of Proteome Panels and Meta-Data

Jing Hua Zhao

Uwe Ligges

Benjamin Altmann

SomaScan160410 function

A data frame with 5,178 rows and 10 variables:<dl>
<dt><code>SOMAMER_ID</code></dt>
<dd>Somamer id</dd><dt><code>UniProt</code></dt>
<dd>UniProt id</dd><dt><code>Target</code></dt>
<dd>Protein target</dd><dt><code>TargetFullName</code></dt>
<dd>Protein target full name</dd><dt><code>chr</code></dt>
<dd>chromosome (1-22,X,Y)</dd><dt><code>start</code></dt>
<dd>start</dd><dt><code>end</code></dt>
<dd>end</dd><dt><code>entGene</code></dt>
<dd>entrez gene</dd><dt><code>ensGene</code></dt>
<dd>ENSEMBL gene</dd><dt><code>extGene</code></dt>
<dd>external gene</dd>
</dl>

Format

Somascan panel — SomaScan160410

A data frame with 5,178 rows and 10 variables:<dl>
<dt><code>SOMAMER_ID</code></dt>
<dd>Somamer id</dd>

<dt><code>UniProt</code></dt>
<dd>UniProt id</dd>

<dt><code>Target</code></dt>
<dd>Protein target</dd>

<dt><code>TargetFullName</code></dt>
<dd>Protein target full name</dd>

<dt><code>chr</code></dt>
<dd>chromosome (1-22,X,Y)</dd>

<dt><code>start</code></dt>
<dd>start</dd>

<dt><code>end</code></dt>
<dd>end</dd>

<dt><code>entGene</code></dt>
<dd>entrez gene</dd>

<dt><code>ensGene</code></dt>
<dd>ENSEMBL gene</dd>

<dt><code>extGene</code></dt>
<dd>external gene</dd>


</dl>

SomaScan160410: Somascan panel

Description

Usage

Arguments

Format

Details

References