scallop_inf1

Supplementary information for zhao23;textualpQTLdata.

datasets

internal

It aggregates protein panel data and metadata for protein quantitative
trait locus (pQTL) analysis using 'pQTLtools' (<https://jinghuazhao.github.io/pQTLtools/>).
The package includes data from affinity-based panels such as 'Olink' (<https://olink.com/>)
and 'SomaScan' (<https://somalogic.com/>), as well as mass spectrometry-based panels from
'CellCarta' (<https://cellcarta.com/>) and 'Seer' (<https://seer.bio/>). The metadata
encompasses updated annotations and publication details.

Jing Zhao

pQTLdata

A Collection of Proteome Panels and Meta-Data

Jing Hua Zhao

Uwe Ligges

Benjamin Altmann

scallop_inf1 function

A data frame with 180 rows and 19 variables:<dl>
<dt>UniProt</dt>
<dd>UnitProt ID</dd><dt>Protein</dt>
<dd>Protein name</dd><dt>Protein_gene_symbol</dt>
<dd>Gene symbol</dd><dt>Chromosome</dt>
<dd>Chromosome</dd><dt>Position</dt>
<dd>Position</dd><dt>cistrans</dt>
<dd>cis/trans</dd><dt>rsid</dt>
<dd>reference sequence ID</dd><dt>Effect_allele</dt>
<dd>Effect allele</dd><dt>Other_allele</dt>
<dd>Eeference allele</dd><dt>EAF</dt>
<dd>Effect allele frequency</dd><dt>b</dt>
<dd>b</dd><dt>SE</dt>
<dd>SE</dd><dt>log10P</dt>
<dd>log10(P)</dd><dt>Direction</dt>
<dd>Direction field in METAL output</dd><dt>HetISq</dt>
<dd>I\(^2\)</dd><dt>HetChiSq</dt>
<dd>Heterogeneity chi-square</dd><dt>HetDf</dt>
<dd>degrees of freedom</dd><dt>logHetP</dt>
<dd>Heterogeneity log10(P)</dd><dt>N</dt>
<dd>N</dd>
</dl>

Format

Supplementary table 3 — scallop_inf1

A data frame with 180 rows and 19 variables:<dl>
<dt>UniProt</dt>
<dd>UnitProt ID</dd>

<dt>Protein</dt>
<dd>Protein name</dd>

<dt>Protein_gene_symbol</dt>
<dd>Gene symbol</dd>

<dt>Chromosome</dt>
<dd>Chromosome</dd>

<dt>Position</dt>
<dd>Position</dd>

<dt>cistrans</dt>
<dd>cis/trans</dd>

<dt>rsid</dt>
<dd>reference sequence ID</dd>

<dt>Effect_allele</dt>
<dd>Effect allele</dd>

<dt>Other_allele</dt>
<dd>Eeference allele</dd>

<dt>EAF</dt>
<dd>Effect allele frequency</dd>

<dt>b</dt>
<dd>b</dd>

<dt>SE</dt>
<dd>SE</dd>

<dt>log10P</dt>
<dd>log10(P)</dd>

<dt>Direction</dt>
<dd>Direction field in METAL output</dd>

<dt>HetISq</dt>
<dd>I\(^2\)</dd>

<dt>HetChiSq</dt>
<dd>Heterogeneity chi-square</dd>

<dt>HetDf</dt>
<dd>degrees of freedom</dd>

<dt>logHetP</dt>
<dd>Heterogeneity log10(P)</dd>

<dt>N</dt>
<dd>N</dd>


</dl>

scallop_inf1: Supplementary table 3

Description

Usage

Arguments

Format

References