seer1980

datasets

internal

It aggregates protein panel data and metadata for protein quantitative
trait locus (pQTL) analysis using 'pQTLtools' (<https://jinghuazhao.github.io/pQTLtools/>).
The package includes data from affinity-based panels such as 'Olink' (<https://olink.com/>)
and 'SomaScan' (<https://somalogic.com/>), as well as mass spectrometry-based panels from
'CellCarta' (<https://cellcarta.com/>) and 'Seer' (<https://seer.bio/>). The metadata
encompasses updated annotations and publication details.

Jing Zhao

pQTLdata

A Collection of Proteome Panels and Meta-Data

Jing Hua Zhao

Uwe Ligges

Benjamin Altmann

seer1980 function

A data frame with 1,980 rows:<dl>
<dt><code>PID.NP</code></dt>
<dd>PID.NP</dd><dt><code>protein_ids</code></dt>
<dd>protein_ids</dd><dt><code>protein_names</code></dt>
<dd>protein_names</dd><dt><code>mapped.UniProtID</code></dt>
<dd>mapped.UniProtID</dd><dt><code>mapped_gene_id</code></dt>
<dd>mapped_gene_id</dd><dt><code>gene_name</code></dt>
<dd>gene_name</dd><dt><code>description</code></dt>
<dd>description</dd><dt><code>chr</code></dt>
<dd>chr</dd><dt><code>start</code></dt>
<dd>start</dd><dt><code>end</code></dt>
<dd>end</dd>
</dl>

Format

Seer 1980 panel — seer1980

A data frame with 1,980 rows:<dl>
<dt><code>PID.NP</code></dt>
<dd>PID.NP</dd>

<dt><code>protein_ids</code></dt>
<dd>protein_ids</dd>

<dt><code>protein_names</code></dt>
<dd>protein_names</dd>

<dt><code>mapped.UniProtID</code></dt>
<dd>mapped.UniProtID</dd>

<dt><code>mapped_gene_id</code></dt>
<dd>mapped_gene_id</dd>

<dt><code>gene_name</code></dt>
<dd>gene_name</dd>

<dt><code>description</code></dt>
<dd>description</dd>

<dt><code>chr</code></dt>
<dd>chr</dd>

<dt><code>start</code></dt>
<dd>start</dd>

<dt><code>end</code></dt>
<dd>end</dd>


</dl>

Seer 1980 panel

seer1980: Seer 1980 panel

Description

Usage

Arguments

Format

Details

References